Introduction
Machine learning is now pervasive in every field of inquiry and has lead to
breakthroughs in various fields from medical diagnoses to online advertising.
Practical machine learning is quite computationally intensive, whether it involves
millions of repetitions of simple mathematical methods such as
Euclidian Distance or more
intricate optimizers
or backpropagation algorithms.
Such computationally intensive techniques need a fast and expressive language –
one that enables scientists to write simple, readable code that
performs well. Enter Julia.
In this post, we introduce a simple machine learning algorithm
called K Nearest Neighbors,
and demonstrate certain Julia features that allow for its easy and efficient
implementation. We will demonstrate that the code we write is inherently
generic, and show the use of the same code to run on GPUs via the
ArrayFire package.
Problem statement
We need to come up with a character recognition software that can identify images
of textual characters. The data we’ll be using for this problem are a
set of images from Google Street View.
The algorithm we’ll be using is called k-Nearest Neighbors (kNN), which is a
useful starting point for working on problems of this nature.
Solution
Let us begin by taking a good look at our data. First, we read the data from a set of
CSV files from disk, and plot a histogram that represents the distribution of the training data:
# Read training set
trainLabels = readtable("$(path)/trainLabels.csv")
counts=by(trainLabels, :Class, nrow);
plot(x = counts[:Class], y=counts[:x1], color = counts[:Class], Theme(key_position = :none), Guide.xlabel("Characters")
When developing this code within an integrared environment such as IJulia Notebooks, we can explore this data interactively. For example, we can scroll through the images using the
Interact package:
@manipulate for i = 1:size(trainLabels,1)
load("$(path)/trainResized/$i.Bmp")
end
kNN
The solution of labelling the image with its textual character involves finding the “distances” of each image in the training
set to every other image. Then, the image under consideration is classified
as having the most common label among its k nearest images.
We use Euclidean distance
to measure the proximity of the images:
Let X be a set of m training samples, Y be the labels for each of those samples, and x be
the unknown sample to be classified. We perform the following steps:
- First, calculate all the distances:
for i = 1 to m
distance = d(X(i), x)
end
We can also represent this generally in matrix notation:
function get_all_distances(imageI::AbstractArray, x::AbstractArray)
diff = imageI .- x
distances = vec(sum(diff .* diff,1))
end
- Then sort the distances in ascending order and select first
kindices
from the sorted list.
function get_k_nearest_neighbors(x::AbstractArray, imageI::AbstractArray, k::Int = 3, train = true)
nRows, nCols = size(x)
distances = get_all_distances(imageI, x)
sortedNeighbors = sortperm(distances)
if train
return kNearestNeighbors = Array(sortedNeighbors[2:k+1])
else
return kNearestNeighbors = Array(sortedNeighbors[1:k])
end
end
- Finally, classify
xas the most common element among thekindices.
function assign_label(x::AbstractArray, y::AbstractArray{Int64}, imageI::AbstractArray, k, train::Bool)
kNearestNeighbors = get_k_nearest_neighbors(x, imageI, k, train)
counts = Dict{Int, Int}()
highestCount = 0
mostPopularLabel = 0
for n in kNearestNeighbors
labelOfN = y[n]
if !haskey(counts, labelOfN)
counts[labelOfN] = 0
end
counts[labelOfN] += 1
if counts[labelOfN] > highestCount
highestCount = counts[labelOfN]
mostPopularLabel = labelOfN
end
end
mostPopularLabel
end
The objective is to find the best value of k such that we reach optimal
accuracy.
Training
We use the labeled data to find the optimal value of k. The following code
will output the accuracy for values of k from 3 to 5, for example.
for k = 3:5
checks = trues(size(train_data, 2))
@time for i = 1:size(train_data, 2)
imageI = train_data[:,i]
checks[i] = (assign_label(train_data, trainLabelsInt, imageI, k, true) == trainLabelsInt[i])
end
accuracy = length(find(checks)) / length(checks)
@show accuracy
end
Testing
Now, from our training, we should have identified a value of k that gives us
the best accuracy. Of course, this varies depending on the data. Suppose our runs
tell us the best value of k is 3. It’s time to now test our model. For this,
we can actually use the same code that we used for training, but we needn’t check
for accuracy or loop over values of k.
x = test_data
xT = train_data
yT = trainLabelsInt
k = 3, #say
prediction = zeros(Int,size(x,2))
@time for i = 1:size(x,2)
imageI = x[:,i]
prediction[i] = assign_label(xT, yT, imageI, k, false)
end
Improving Performance
There are a couple of ways we can speed up our code. Notice that each iteration
of the for-loop in the main compute loop is independent. This looks like a great
candidate for parallelisation. So, we can spawn a couple
of Julia processes and execute the for loop in parallel.
Parallel for-loops
The macro @parallel will split the iteration space amongst the available Julia
processes and then perform the computation in each process simultaneously.
Let us first add n processes by using the addprocs function. We
then execute the following for loop in parallel.
addprocs(n)
@time sumValues = @parallel (+) for i in 1:size(xTrain, 2)
assign_label(xTrain, yTrain, k, i) == yTrain[i, 1]
end
The following scaling plot shows performance variation as you spawn more processes:
GPU Acceleration
The ArrayFire package enables us to run
computations on various general purpose GPUs from within Julia programs.
The AFArray constructor from this package
converts Julia vectors to ArrayFire Arrays, which can be transferred to the GPU.
Converting Arrays to AFArrays allows us to trivially use the same code as above to run our
computation on the GPU.
checks = trues(AFArray{Bool}, size(train_data, 2))
train_data = AFArray(train_data)
trainLabelsInt = AFArray(trainLabelsInt)
for k = 3:5
@time for i = 1:size(train_data, 2)
imageI = train_data[:,i]
checks[i] = (assign_label(train_data, trainLabelsInt, imageI, k, true) == trainLabelsInt[i])
end
accuracy = length(find(checks)) / length(checks)
@show accuracy
end
Benchmarking against the serial version shows a significant speedup, which has been achieved without much extra code!
| Serial Time | ArrayFire Time |
|---|---|
| 34 sec | 20 sec |
Conclusion
- Julia allows for easy prototyping and deployment of machine learning models.
- Parallelization also very easy to implement.
- Built-in parallelism gives the programmer a variety of options to speed up their code.
- Generic code can be run on GPUs using the package
ArrayFire
Future Work
Congratulations! You now know how to write a simple image recognition model using
kNN. While this represents a good starting point for problems such as these, it is by
no means the state of the art. We shall explore more sophisticated methods, such as deep
neural networks, in a future blog post.
